From 4e311b221959df41f542d785d2effa620604c7f0 Mon Sep 17 00:00:00 2001 From: mes5k Date: Tue, 7 Sep 2004 18:24:18 +0000 Subject: [PATCH] fixed test output for new formatting --- tests/test15.out | 3 ++- tests/test16.out | 3 ++- tests/test17.out | 3 ++- tests/test22.out | 3 ++- tests/test23.out | 3 ++- tests/test24.out | 3 ++- tests/test31.out | 3 ++- tests/test32.out | 3 ++- tests/test38.out | 7 +++++-- tests/test39.out | 7 +++++-- tests/test42.out | 3 ++- tests/test44.out | 3 ++- tests/test46.out | 34 ++++++++++++++++++++++++++++++++-- 13 files changed, 62 insertions(+), 16 deletions(-) diff --git a/tests/test15.out b/tests/test15.out index eb8ae2f..6742abd 100644 --- a/tests/test15.out +++ b/tests/test15.out @@ -3,7 +3,8 @@ PARSE ERROR: Argument: -s (--stringTest) Brief USAGE: ../examples/test3 [-f=] ... [-i=] ... -s= [-B] - [--] [-v] [-h] ... + [--] [-v] [-h] + ... For complete USAGE and HELP type: ../examples/test3 --help diff --git a/tests/test16.out b/tests/test16.out index eb8ae2f..6742abd 100644 --- a/tests/test16.out +++ b/tests/test16.out @@ -3,7 +3,8 @@ PARSE ERROR: Argument: -s (--stringTest) Brief USAGE: ../examples/test3 [-f=] ... [-i=] ... -s= [-B] - [--] [-v] [-h] ... + [--] [-v] [-h] + ... For complete USAGE and HELP type: ../examples/test3 --help diff --git a/tests/test17.out b/tests/test17.out index 60ee580..135ec94 100644 --- a/tests/test17.out +++ b/tests/test17.out @@ -3,7 +3,8 @@ PARSE ERROR: Brief USAGE: ../examples/test3 [-f=] ... [-i=] ... -s= [-B] - [--] [-v] [-h] ... + [--] [-v] [-h] + ... For complete USAGE and HELP type: ../examples/test3 --help diff --git a/tests/test22.out b/tests/test22.out index a466b50..c83f564 100644 --- a/tests/test22.out +++ b/tests/test22.out @@ -3,7 +3,8 @@ PARSE ERROR: Argument: -b (--bbb) Brief USAGE: ../examples/test5 {-a |-b } {--eee |--fff - |-g } [--ddd] -c [--] [-v] [-h] + |-g } [--ddd] -c [--] [-v] + [-h] For complete USAGE and HELP type: ../examples/test5 --help diff --git a/tests/test23.out b/tests/test23.out index f4ed8e0..fc4c325 100644 --- a/tests/test23.out +++ b/tests/test23.out @@ -3,7 +3,8 @@ PARSE ERROR: Argument: -d Brief USAGE: ../examples/test5 {-a |-b } {--eee |--fff - |-g } [--ddd] -c [--] [-v] [-h] + |-g } [--ddd] -c [--] [-v] + [-h] For complete USAGE and HELP type: ../examples/test5 --help diff --git a/tests/test24.out b/tests/test24.out index a466b50..c83f564 100644 --- a/tests/test24.out +++ b/tests/test24.out @@ -3,7 +3,8 @@ PARSE ERROR: Argument: -b (--bbb) Brief USAGE: ../examples/test5 {-a |-b } {--eee |--fff - |-g } [--ddd] -c [--] [-v] [-h] + |-g } [--ddd] -c [--] [-v] + [-h] For complete USAGE and HELP type: ../examples/test5 --help diff --git a/tests/test31.out b/tests/test31.out index ac429f6..4d2c15b 100644 --- a/tests/test31.out +++ b/tests/test31.out @@ -3,7 +3,8 @@ PARSE ERROR: Argument: -i (--intTest) Brief USAGE: ../examples/test3 [-f=] ... [-i=] ... -s= [-B] - [--] [-v] [-h] ... + [--] [-v] [-h] + ... For complete USAGE and HELP type: ../examples/test3 --help diff --git a/tests/test32.out b/tests/test32.out index 19ad1bc..98d984f 100644 --- a/tests/test32.out +++ b/tests/test32.out @@ -3,7 +3,8 @@ PARSE ERROR: Argument: -f (--floatTest) Brief USAGE: ../examples/test3 [-f=] ... [-i=] ... -s= [-B] - [--] [-v] [-h] ... + [--] [-v] [-h] + ... For complete USAGE and HELP type: ../examples/test3 --help diff --git a/tests/test38.out b/tests/test38.out index b7e3234..3f14859 100644 --- a/tests/test38.out +++ b/tests/test38.out @@ -2,8 +2,11 @@ PARSE ERROR: Argument: -n (--name) Couldn't find 'mike' in allowed list. Brief USAGE: - ../examples/test7 -n ... [--] [-v] [-h] - <1|2|3> ... + ../examples/test7 [-l ] [-u ] [-b ] [-F + ] [-f ] [-s ] [-d] + [-g ] [-f ] -n ... [--] [-v] [-h] <1|2|3> + ... For complete USAGE and HELP type: ../examples/test7 --help diff --git a/tests/test39.out b/tests/test39.out index ebb82b0..c2e9c56 100644 --- a/tests/test39.out +++ b/tests/test39.out @@ -2,8 +2,11 @@ PARSE ERROR: Argument: (--times) Couldn't find '6' in allowed list. Brief USAGE: - ../examples/test7 -n ... [--] [-v] [-h] - <1|2|3> ... + ../examples/test7 [-l ] [-u ] [-b ] [-F + ] [-f ] [-s ] [-d] + [-g ] [-f ] -n ... [--] [-v] [-h] <1|2|3> + ... For complete USAGE and HELP type: ../examples/test7 --help diff --git a/tests/test42.out b/tests/test42.out index 599be12..e3914f8 100644 --- a/tests/test42.out +++ b/tests/test42.out @@ -2,7 +2,8 @@ USAGE: ../examples/test3 [-f=] ... [-i=] ... -s= [-B] - [--] [-v] [-h] ... + [--] [-v] [-h] + ... Where: diff --git a/tests/test44.out b/tests/test44.out index 9a09da7..27be3f3 100644 --- a/tests/test44.out +++ b/tests/test44.out @@ -2,7 +2,8 @@ USAGE: ../examples/test5 {-a |-b } {--eee |--fff - |-g } [--ddd] -c [--] [-v] [-h] + |-g } [--ddd] -c [--] [-v] + [-h] Where: diff --git a/tests/test46.out b/tests/test46.out index da55835..9ed6756 100644 --- a/tests/test46.out +++ b/tests/test46.out @@ -1,12 +1,42 @@ USAGE: - ../examples/test7 -n ... [--] [-v] [-h] - <1|2|3> ... + ../examples/test7 [-l ] [-u ] [-b ] [-F + ] [-f ] [-s ] [-d] + [-g ] [-f ] -n ... [--] [-v] [-h] <1|2|3> + ... Where: + -l , --limit + (value required) Max number of alignments allowed + + -u , --upperBound + (value required) upper percentage bound + + -b , --lowerBound + (value required) lower percentage bound + + -F , --filename2 + (value required) Sequence 2 filename (FASTA format) + + -f , --filename1 + (value required) Sequence 1 filename (FASTA format) + + -s , --scoringMatrix + (value required) Scoring Matrix name + + -d, --isDna + The input sequences are DNA + + -g , --gapExtend + (value required) The cost for each extension of a gap + + -f , --gapCreate + (value required) The cost of creating a gap + -n , --name (accepted multiple times) (required) (value required) Name to print. This is a long,