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added more args to better test output printing

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This commit is contained in:
mes5k 2004-09-07 18:25:52 +00:00
parent a01538d7ba
commit 523af24f81
1 changed files with 38 additions and 0 deletions
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38
examples/test7.cpp
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@ -2,6 +2,7 @@
#include <tclap/CmdLine.h>
using namespace TCLAP;
using namespace std;
int main(int argc, char** argv)
{
@ -30,6 +31,43 @@ int main(int argc, char** argv)
UnlabeledMultiArg<int> intArg("times","Number of times to print",iallowed);
cmd.add( intArg );
// Ignore the names and comments! These args mean nothing (to this
// program) and are here solely to take up space.
ValueArg<int> gapCreate("f","gapCreate", "The cost of creating a gap",
false, -10, "negative int");
cmd.add( gapCreate );
ValueArg<int> gapExtend("g","gapExtend",
"The cost for each extension of a gap", false, -2, "negative int");
cmd.add( gapExtend );
SwitchArg dna("d","isDna","The input sequences are DNA", false);
cmd.add( dna );
ValueArg<string> scoringMatrixName("s","scoringMatrix",
"Scoring Matrix name", false,"BLOSUM50","name string");
cmd.add( scoringMatrixName );
ValueArg<string> seq1Filename ("f","filename1",
"Sequence 1 filename (FASTA format)", false,"","filename");
cmd.add( seq1Filename );
ValueArg<string> seq2Filename ("F","filename2",
"Sequence 2 filename (FASTA format)", false,"","filename");
cmd.add( seq2Filename );
ValueArg<float> lowerBound("b","lowerBound", "lower percentage bound",
false,1.0,"float lte 1");
cmd.add( lowerBound );
ValueArg<float> upperBound("u","upperBound", "upper percentage bound",
false,1.0,"float lte 1");
cmd.add( upperBound );
ValueArg<int> limit("l","limit","Max number of alignments allowed",
false, 1000,"int");
cmd.add( limit );
// Parse the args.
cmd.parse( argc, argv );