moved all Makefile.am to Makefile.am.orig, added .alt ones and added link creation in autogen

src/Makefile.am.alt

@@ -0,0 +1,29 @@
+SUBDIRS = dependencies #\
+#zimlib \
+#ctpp2 \
+#pugixml \
+#components
+
+if WITH_MANAGER
+    SUBDIRS += manager 
+endif
+
+if (IS_POSIX && WITH_SERVER)
+    SUBDIRS += server 
+endif
+
+if WITH_INDEXER
+    SUBDIRS += indexer 
+endif
+
+if WITH_INSTALLER
+    SUBDIRS += installer 
+endif
+
+if WITH_SEARCHER
+    SUBDIRS += searcher 
+endif
+
+if WITH_READER
+    SUBDIRS += reader 
+endif

src/Makefile.am.orig

@@ -0,0 +1,24 @@
+if IS_OSX
+SUBDIRS = ${DEPENDENCES} \
+	zimlib \
+	ctpp2 \
+	pugixml \
+	components \
+	manager \
+	dependences
+else
+SUBDIRS = ${DEPENDENCES} \
+	zimlib \
+	ctpp2 \
+	pugixml \
+	components \
+	server \
+	manager 
+if IS_STATIC
+else
+SUBDIRS += indexer \
+	installer \
+	searcher \
+	reader
+endif
+endif

src/ctpp2/Makefile.am.orig

@@ -0,0 +1,2 @@
+SUBDIRS=src
+EXTRA_DIST=include

src/ctpp2/src/Makefile.am.orig

@@ -0,0 +1,93 @@
+AM_CPPFLAGS=-I$(top_srcdir)/src/ctpp2/include -I$(top_srcdir)/src/ctpp2/include/functions
+
+noinst_LTLIBRARIES = libctpp2.la
+
+libctpp2_la_SOURCES = \
+	CTPP2Logger.cpp \
+	CTPP2VMExecutable.cpp \
+	CTPP2JSONFileParser.cpp \
+	CTPP2FileSourceLoader.cpp \
+	CTPP2VMMemoryCore.cpp \
+	CTPP2VMOpcodeCollector.cpp \
+	CTPP2VMArgStack.cpp \
+	CTPP2FileOutputCollector.cpp \
+	CTPP2Compiler.cpp \
+	CTPP2VMFileLoader.cpp \
+	CTPP2BitIndex.cpp \
+	CTPP2VMException.cpp \
+	CTPP2StreamOutputCollector.cpp \
+	CTPP2StringBuffer.cpp \
+	CDTSortRoutines.cpp \
+	CTPP2VMDebugInfo.cpp \
+	CTPP2SyscallFactory.cpp \
+	CTPP2HashTable.cpp \
+	CTPP2Exception.cpp \
+	CTPP2Sprintf.cpp \
+	CTPP2StaticData.cpp \
+	CDT.cpp \
+	CTPP2VMSTDLib.cpp \
+	CTPP2VMSyscall.cpp \
+	CTPP2ParserException.cpp \
+	CTPP2VM.cpp \
+	CTPP2FileLogger.cpp \
+	CTPP2Parser.cpp \
+	CTPP2Error.cpp \
+	CTPP2StaticText.cpp \
+	CTPP2StringOutputCollector.cpp \
+	CTPP2VMCodeStack.cpp \
+	functions/FnBase64Encode.cpp \
+	functions/FnInSet.cpp \
+	functions/FnSubstring.cpp \
+	functions/FnGetText.cpp \
+	functions/FnMin.cpp \
+	functions/FnMBSubstring.cpp \
+	functions/FnVersion.cpp \
+	functions/FnListElement.cpp \
+	functions/FnMax.cpp \
+	functions/FnConcat.cpp \
+	functions/FnSize.cpp \
+	functions/FnMBSize.cpp \
+	functions/FnBase64Decode.cpp \
+	functions/FnFormParam.cpp \
+	functions/FnXMLEscape.cpp \
+	functions/FnWMLEscape.cpp \
+	functions/FnHMACMD5.cpp \
+	functions/FnDateFormat.cpp \
+	functions/FnHTMLEscape.cpp \
+	functions/FnTruncate.cpp \
+	functions/FnURLEscape.cpp \
+	functions/FnIconv.cpp \
+	functions/FnURIEscape.cpp \
+	functions/FnNumFormat.cpp \
+	functions/FnMD5.cpp \
+	functions/FnGetText_.cpp \
+	functions/FnJSEscape.cpp \
+	functions/FnDefined.cpp \
+	functions/FnSprintf.cpp \
+	functions/FnHrefParam.cpp \
+	functions/FnCast.cpp \
+	functions/FnJSON.cpp \
+	functions/FnRandom.cpp \
+	functions/FnLog.cpp \
+	functions/FnObjDump.cpp \
+	functions/FnMBTruncate.cpp \
+	functions/FnDefault.cpp \
+	functions/FnNumeral.cpp \
+	functions/FnAvg.cpp \
+	functions/FnEmitter.cpp \
+	functions/FnError.cpp \
+	functions/FnHashElement.cpp \
+	functions/FnArrayElement.cpp \
+	CTPP2VMDumper.cpp \
+	CTPP2JSONParser.cpp \
+	CTPP2DTOA.cpp \
+	CTPP2Util.cpp
+
+libctpp2_la_CXXFLAGS=-fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
+if IS_OSX
+libctpp2_la_CXXFLAGS+= -I/opt/local/include
+endif
+
+libctpp2_la_LDFLAGS=
+
+CLEANFILES=*.obj *.lib *.dll

src/ctype/Makefile.am.orig

@@ -0,0 +1,7 @@
+if IS_OSX
+SUBDIRS = \
+	zimAccessor
+else
+SUBDIRS = \
+	zimAccessor
+endif

src/ctype/zimAccessor/Makefile.am.orig

@@ -0,0 +1,23 @@
+pkglib_LTLIBRARIES=libZimAccessor.la
+pkglibdir=$(libdir)/kiwix/components/ctype
+AM_CPPFLAGS=-I$(top_srcdir)/src/common -I$(top_srcdir)/src/zimlib/include
+libZimAccessor_la_SOURCES= \
+	zimAccessor.cpp \
+	zimAccessorWrapper.cpp \
+	$(top_srcdir)/src/common/kiwix/reader.cpp \
+	IZimAccessor.h \
+	zimAccessorWrapper.h \
+	$(top_srcdir)/src/common/kiwix/reader.h \
+	$(top_srcdir)/src/common/pathTools.h \
+	$(top_srcdir)/src/common/pathTools.cpp \
+libZimAccessor_la_CXXFLAGS=$(LIBZIM_CFLAGS) -I../../common/
+if IS_STATIC
+libZimAccessor_la_LDFLAGS=$(LIBZIM_STATIC_LDFLAGS) $(LIBZIMSELF_STATIC_LDFLAGS) $(LIBLZMA_STATIC_LDFLAGS)
+else
+libZimAccessor_la_LDFLAGS=$(LIBZIM_LDFLAGS)
+libZimAccessor_la_LIBADD=$(top_builddir)/src/zimlib/src/libzim.la
+endif
+if IS_OSX
+libZimAccessor_la_LDFLAGS=$(LIBZIM_STATIC_LDFLAGS) $(LIBZIMSELF_STATIC_LDFLAGS)
+endif
+CLEANFILES=*.lib *.obj *.dll

src/indexer/Makefile.am.orig

@@ -0,0 +1,21 @@
+bin_PROGRAMS=kiwix-index
+AM_CPPFLAGS=-I$(top_srcdir)/src/common -I$(top_srcdir)/src/zimlib/include -I$(top_srcdir)/src/ctpp2/include
+kiwix_index_SOURCES= \
+	kiwix-index.cpp \
+	../common/kiwix/xapian/myhtmlparse.cc \
+	../common/kiwix/xapian/htmlparse.cc \
+	../common/unaccent.cpp \
+	../common/kiwix/indexer.cpp \
+	../common/kiwix/xapianIndexer.cpp \
+	../common/kiwix/cluceneIndexer.cpp 
+include_HEADERS= \
+	../common/kiwix/xapian/myhtmlparse.h \
+	../common/kiwix/xapian/namedentities.h \
+	../common/kiwix/xapian/htmlparse.h \
+	../common/unaccent.h \
+	../common/kiwix/indexer.h \
+	../common/kiwix/xapianIndexer.h \
+	../common/kiwix/cluceneIndexer.h 
+kiwix_index_CXXFLAGS=$(LIBXAPIAN_CFLAGS) $(LIBCLUCENE_CFLAGS) $(LIBICU_CFLAGS) $(LIBZIM_CFLAGS) -I../common/
+kiwix_index_LDFLAGS=$(LIBXAPIAN_LDFLAGS) $(LIBCLUCENE_LDFLAGS) $(LIBICU_LDFLAGS) $(LIBZIM_LDFLAGS)
+kiwix_index_LDADD=../zimlib/src/.libs/libzim.a

src/installer/Makefile.am.orig

@@ -0,0 +1,33 @@
+bin_PROGRAMS=kiwix-install
+AM_CPPFLAGS=-I$(top_srcdir)/src/common -I$(top_srcdir)/src/zimlib/include -I$(top_srcdir)/src/pugixml
+kiwix_install_SOURCES= \
+	kiwix-install.cpp \
+	../common/kiwix/xapian/myhtmlparse.cc \
+	../common/kiwix/xapian/htmlparse.cc \
+	../common/kiwix/xapianIndexer.cpp \
+	../common/kiwix/cluceneIndexer.cpp \
+	../common/unaccent.cpp \
+	../common/base64.cpp \
+	../common/kiwix/indexer.cpp \
+	../common/kiwix/reader.cpp \
+	../common/kiwix/library.cpp \
+	../common/kiwix/manager.cpp \
+	../common/regexTools.cpp \
+	../common/pathTools.cpp 
+include_HEADERS= \
+	../common/kiwix/xapian/myhtmlparse.h \
+	../common/kiwix/xapian/namedentities.h \
+	../common/kiwix/xapian/htmlparse.h \
+	../common/kiwix/xapianIndexer.h \
+	../common/kiwix/cluceneIndexer.h \
+	../common/unaccent.h \
+	../common/base64.h \
+	../common/kiwix/indexer.h \
+	../common/kiwix/reader.h \
+	../common/kiwix/library.h \
+	../common/kiwix/manager.h \
+	../common/regexTools.h \
+	../common/pathTools.h 
+kiwix_install_CXXFLAGS=$(LIBXAPIAN_CFLAGS) $(LIBCLUCENE_CFLAGS) $(LIBICU_CFLAGS) $(LIBPUGIXML_CFLAGS) -I../common/
+kiwix_install_LDFLAGS=$(LIBXAPIAN_LDFLAGS) $(LIBCLUCENE_LDFLAGS) $(LIBICU_LDFLAGS) $(LIBPUGIXML_LDFLAGS)
+kiwix_install_LDADD=../zimlib/src/libzim.la ../pugixml/libpugixml.la

src/manager/Makefile.am.orig

@@ -0,0 +1,27 @@
+bin_PROGRAMS=kiwix-manage
+AM_CPPFLAGS=-I$(top_srcdir)/src/common -I$(top_srcdir)/src/zimlib/include -I$(top_srcdir)/src/pugixml
+kiwix_manage_SOURCES= \
+	kiwix-manage.cpp \
+	../common/kiwix/manager.cpp \
+	../common/kiwix/library.cpp \
+	../common/kiwix/reader.cpp \
+	../common/base64.cpp \
+	../common/regexTools.cpp \
+	../common/pathTools.cpp 
+include_HEADERS= \
+	../common/kiwix/manager.h \
+	../common/kiwix/library.h \
+	../common/kiwix/reader.h \
+	../common/base64.h \
+	../common/regexTools.h \
+	../common/pathTools.h 
+kiwix_manage_CXXFLAGS=$(LIBZIM_CFLAGS) $(LIBICU_CFLAGS) -I../common/
+if IS_STATIC
+kiwix_manage_LDFLAGS=$(LIBZIM_STATIC_LDFLAGS) $(LIBICU_STATIC_LDFLAGS)
+else
+kiwix_manage_LDFLAGS=$(LIBZIM_LDFLAGS) $(LIBICU_LDFLAGS)
+kiwix_manage_LDADD=../zimlib/src/libzim.la ../pugixml/libpugixml.la
+endif
+if IS_OSX
+kiwix_manage_LDFLAGS=$(LIBZIM_STATIC_LDFLAGS) $(LIBICU_STATIC_LDFLAGS)
+endif

src/pugixml/Makefile.am.orig

@@ -0,0 +1,13 @@
+AM_CPPFLAGS=
+
+noinst_LTLIBRARIES = libpugixml.la
+
+libpugixml_la_SOURCES = \
+	pugixml.cpp \
+	pugixml.hpp \
+	pugiconfig.hpp
+
+libpugixml_la_CXXFLAGS=-fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
+libpugixml_la_LDFLAGS=
+
+CLEANFILES=*.obj *.lib *.dll

src/reader/Makefile.am.orig

@@ -0,0 +1,14 @@
+bin_PROGRAMS=kiwix-read
+AM_CPPFLAGS=-I$(top_srcdir)/src/common -I$(top_srcdir)/src/zimlib/include
+kiwix_read_SOURCES= \
+	kiwix-read.cpp \
+	../common/kiwix/reader.cpp
+include_HEADERS= \
+	../common/kiwix/reader.h
+kiwix_read_CXXFLAGS=$(LIBZIM_CFLAGS) -I../common/
+if IS_STATIC
+kiwix_read_LDFLAGS=$(LIBZIM_STATIC_LDFLAGS) $(LIBZIMSELF_STATIC_LDFLAGS) $(LIBLZMA_STATIC_LDFLAGS)
+else
+kiwix_read_LDFLAGS=$(LIBZIM_LDFLAGS)
+kiwix_read_LDADD=$(top_builddir)/src/zimlib/src/libzim.la
+endif

src/searcher/Makefile.am.orig

@@ -0,0 +1,16 @@
+bin_PROGRAMS=kiwix-search
+AM_CPPFLAGS=-I$(top_srcdir)/src/common
+kiwix_search_SOURCES= \
+	kiwix-search.cpp \
+	../common/unaccent.cpp \
+	../common/kiwix/searcher.cpp \
+	../common/kiwix/xapianSearcher.cpp \
+	../common/kiwix/cluceneSearcher.cpp 
+include_HEADERS= \
+	../common/unaccent.h \
+	../common/kiwix/searcher.h \
+	../common/kiwix/xapianSearcher.h \
+	../common/kiwix/cluceneSearcher.h 
+kiwix_search_CXXFLAGS=$(LIBXAPIAN_CFLAGS) $(LIBCLUCENE_CFLAGS) $(LIBICU_CFLAGS) $(LIBCTPP2_CFLAGS) -I../common/
+kiwix_search_LDFLAGS=$(LIBXAPIAN_LDFLAGS) $(LIBCLUCENE_LDFLAGS) $(LIBICU_LDFLAGS) $(LIBCTPP2_LDFLAGS)
+kiwix_search_LDADD=../ctpp2/src/.libs/libctpp2.a

src/server/Makefile.am.orig

@@ -0,0 +1,34 @@
+bin_PROGRAMS=kiwix-serve
+AM_CPPFLAGS=-I$(top_srcdir)/src/common -I$(top_srcdir)/src/zimlib/include -I$(top_srcdir)/src/ctpp2/include -I$(top_srcdir)/src/pugixml
+kiwix_serve_SOURCES= \
+	kiwix-serve.cpp \
+	../common/kiwix/reader.cpp \
+	../common/kiwix/searcher.cpp \
+	../common/kiwix/manager.cpp \
+	../common/kiwix/library.cpp \
+	../common/kiwix/xapianSearcher.cpp \
+	../common/kiwix/cluceneSearcher.cpp \
+	../common/unaccent.cpp \
+	../common/base64.cpp \
+	../common/pathTools.cpp \
+	../common/regexTools.cpp \
+	../common/splitString.cpp 
+include_HEADERS= \
+	../common/kiwix/reader.h \
+	../common/kiwix/searcher.h \
+	../common/kiwix/manager.h \
+	../common/kiwix/library.h \
+	../common/kiwix/xapianSearcher.h \
+	../common/kiwix/cluceneSearcher.h \
+	../common/unaccent.h \
+	../common/base64.h \
+	../common/pathTools.h \
+	../common/regexTools.h \
+	../common/splitString.cpp 
+kiwix_serve_CXXFLAGS=${LIBMICROHTTPD_CFLAGS} $(LIBPUGIXML_CFLAGS) $(LIBCTPP2_CFLAGS) $(LIBCLUCENE_CFLAGS) $(LIBXAPIAN_CFLAGS) $(LIBICU_CFLAGS) $(LIBZIM_CFLAGS) -I../common/
+if IS_STATIC
+kiwix_serve_LDFLAGS= -ldl -lm -lpthread -luuid ${LIBMICROHTTPD_STATIC_LDFLAGS} ${LIBPUGIXML_STATIC_LDFLAGS} $(LIBCTPP2_STATIC_LDFLAGS) $(LIBCLUCENE_STATIC_LDFLAGS) $(LIBXAPIAN_STATIC_LDFLAGS) $(LIBICU_STATIC_LDFLAGS) $(LIBZIMSELF_STATIC_LDFLAGS) $(LIBLZMA_STATIC_LDFLAGS) $(LIBZ_STATIC_LDFLAGS)
+else
+kiwix_serve_LDFLAGS=${LIBMICROHTTPD_LDFLAGS} $(LIBPUGIXML_LDLAGS) $(LIBCTPP2_LDLAGS) $(LIBCLUCENE_LDFLAGS) $(LIBXAPIAN_LDFLAGS) $(LIBICU_LDFLAGS) $(LIBZIM_LDFLAGS)
+endif
+kiwix_serve_LDADD=../zimlib/src/.libs/libzim.a ../ctpp2/src/.libs/libctpp2.a ../pugixml/.libs/libpugixml.a

src/zimlib/Makefile.am.orig

@@ -0,0 +1,2 @@
+SUBDIRS=src
+EXTRA_DIST=include

src/zimlib/src/Makefile.am.orig

@@ -0,0 +1,35 @@
+AM_CPPFLAGS=-I$(top_srcdir)/src/zimlib/include
+
+noinst_LTLIBRARIES = libzim.la
+
+libzim_la_SOURCES = \
+	article.cpp \
+	articlesearch.cpp \
+	cluster.cpp \
+	dirent.cpp \
+	file.cpp \
+	fileheader.cpp \
+	fileimpl.cpp \
+	indexarticle.cpp \
+	ptrstream.cpp \
+	search.cpp \
+	template.cpp \
+	unicode.cpp \
+	uuid.cpp \
+	zintstream.cpp \
+	envvalue.cpp \
+	lzmastream.cpp \
+	unlzmastream.cpp \
+	fstream.cpp \
+	md5.cpp \
+	md5stream.cpp \
+	ptrstream.h \
+	log.h \
+	envvalue.h \
+	md5stream.h \
+	md5.h
+
+libzim_la_CXXFLAGS=${LIBLZMA_CFLAGS} -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
+libzim_la_LDFLAGS=${LIBLZMA_LDFLAGS}
+
+CLEANFILES=*.obj *.lib *.dll

static/Makefile.am.orig

@@ -0,0 +1,2 @@
+templatedir=$(pkgdatadir)/static
+template_DATA=results.tmpl