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fixed test output for new formatting

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This commit is contained in:
mes5k 2004-09-07 18:24:18 +00:00
parent b2c9942f51
commit 4e311b2219
13 changed files with 62 additions and 16 deletions
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3
tests/test15.out
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@ -3,7 +3,8 @@ PARSE ERROR: Argument: -s (--stringTest)
Brief USAGE: Brief USAGE:
../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B] ../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B]
[--] [-v] [-h] <string> <string> <fileNameString> ... [--] [-v] [-h] <string> <string> <fileNameString>
...
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test3 --help ../examples/test3 --help

3
tests/test16.out
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@ -3,7 +3,8 @@ PARSE ERROR: Argument: -s (--stringTest)
Brief USAGE: Brief USAGE:
../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B] ../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B]
[--] [-v] [-h] <string> <string> <fileNameString> ... [--] [-v] [-h] <string> <string> <fileNameString>
...
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test3 --help ../examples/test3 --help

3
tests/test17.out
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@ -3,7 +3,8 @@ PARSE ERROR:
Brief USAGE: Brief USAGE:
../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B] ../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B]
[--] [-v] [-h] <string> <string> <fileNameString> ... [--] [-v] [-h] <string> <string> <fileNameString>
...
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test3 --help ../examples/test3 --help

3
tests/test22.out
View File

@ -3,7 +3,8 @@ PARSE ERROR: Argument: -b (--bbb)
Brief USAGE: Brief USAGE:
../examples/test5 {-a <string>|-b <string>} {--eee <string>|--fff ../examples/test5 {-a <string>|-b <string>} {--eee <string>|--fff
<string>|-g <string>} [--ddd] -c <string> [--] [-v] [-h] <string>|-g <string>} [--ddd] -c <string> [--] [-v]
[-h]
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test5 --help ../examples/test5 --help

3
tests/test23.out
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@ -3,7 +3,8 @@ PARSE ERROR: Argument: -d
Brief USAGE: Brief USAGE:
../examples/test5 {-a <string>|-b <string>} {--eee <string>|--fff ../examples/test5 {-a <string>|-b <string>} {--eee <string>|--fff
<string>|-g <string>} [--ddd] -c <string> [--] [-v] [-h] <string>|-g <string>} [--ddd] -c <string> [--] [-v]
[-h]
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test5 --help ../examples/test5 --help

3
tests/test24.out
View File

@ -3,7 +3,8 @@ PARSE ERROR: Argument: -b (--bbb)
Brief USAGE: Brief USAGE:
../examples/test5 {-a <string>|-b <string>} {--eee <string>|--fff ../examples/test5 {-a <string>|-b <string>} {--eee <string>|--fff
<string>|-g <string>} [--ddd] -c <string> [--] [-v] [-h] <string>|-g <string>} [--ddd] -c <string> [--] [-v]
[-h]
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test5 --help ../examples/test5 --help

3
tests/test31.out
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@ -3,7 +3,8 @@ PARSE ERROR: Argument: -i (--intTest)
Brief USAGE: Brief USAGE:
../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B] ../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B]
[--] [-v] [-h] <string> <string> <fileNameString> ... [--] [-v] [-h] <string> <string> <fileNameString>
...
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test3 --help ../examples/test3 --help

3
tests/test32.out
View File

@ -3,7 +3,8 @@ PARSE ERROR: Argument: -f (--floatTest)
Brief USAGE: Brief USAGE:
../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B] ../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B]
[--] [-v] [-h] <string> <string> <fileNameString> ... [--] [-v] [-h] <string> <string> <fileNameString>
...
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test3 --help ../examples/test3 --help

7
tests/test38.out
View File

@ -2,8 +2,11 @@ PARSE ERROR: Argument: -n (--name)
Couldn't find 'mike' in allowed list. Couldn't find 'mike' in allowed list.
Brief USAGE: Brief USAGE:
../examples/test7 -n <homer|marge|bart|lisa|maggie> ... [--] [-v] [-h] ../examples/test7 [-l <int>] [-u <float lte 1>] [-b <float lte 1>] [-F
<1|2|3> ... <filename>] [-f <filename>] [-s <name string>] [-d]
[-g <negative int>] [-f <negative int>] -n <homer
|marge|bart|lisa|maggie> ... [--] [-v] [-h] <1|2|3>
...
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test7 --help ../examples/test7 --help

7
tests/test39.out
View File

@ -2,8 +2,11 @@ PARSE ERROR: Argument: (--times)
Couldn't find '6' in allowed list. Couldn't find '6' in allowed list.
Brief USAGE: Brief USAGE:
../examples/test7 -n <homer|marge|bart|lisa|maggie> ... [--] [-v] [-h] ../examples/test7 [-l <int>] [-u <float lte 1>] [-b <float lte 1>] [-F
<1|2|3> ... <filename>] [-f <filename>] [-s <name string>] [-d]
[-g <negative int>] [-f <negative int>] -n <homer
|marge|bart|lisa|maggie> ... [--] [-v] [-h] <1|2|3>
...
For complete USAGE and HELP type: For complete USAGE and HELP type:
../examples/test7 --help ../examples/test7 --help

3
tests/test42.out
View File

@ -2,7 +2,8 @@
USAGE: USAGE:
../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B] ../examples/test3 [-f=<float>] ... [-i=<int>] ... -s=<string> [-B]
[--] [-v] [-h] <string> <string> <fileNameString> ... [--] [-v] [-h] <string> <string> <fileNameString>
...
Where: Where:

3
tests/test44.out
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@ -2,7 +2,8 @@
USAGE: USAGE:
../examples/test5 {-a <string>|-b <string>} {--eee <string>|--fff ../examples/test5 {-a <string>|-b <string>} {--eee <string>|--fff
<string>|-g <string>} [--ddd] -c <string> [--] [-v] [-h] <string>|-g <string>} [--ddd] -c <string> [--] [-v]
[-h]
Where: Where:

34
tests/test46.out
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@ -1,12 +1,42 @@
USAGE: USAGE:
../examples/test7 -n <homer|marge|bart|lisa|maggie> ... [--] [-v] [-h] ../examples/test7 [-l <int>] [-u <float lte 1>] [-b <float lte 1>] [-F
<1|2|3> ... <filename>] [-f <filename>] [-s <name string>] [-d]
[-g <negative int>] [-f <negative int>] -n <homer
|marge|bart|lisa|maggie> ... [--] [-v] [-h] <1|2|3>
...
Where: Where:
-l <int>, --limit <int>
(value required) Max number of alignments allowed
-u <float lte 1>, --upperBound <float lte 1>
(value required) upper percentage bound
-b <float lte 1>, --lowerBound <float lte 1>
(value required) lower percentage bound
-F <filename>, --filename2 <filename>
(value required) Sequence 2 filename (FASTA format)
-f <filename>, --filename1 <filename>
(value required) Sequence 1 filename (FASTA format)
-s <name string>, --scoringMatrix <name string>
(value required) Scoring Matrix name
-d, --isDna
The input sequences are DNA
-g <negative int>, --gapExtend <negative int>
(value required) The cost for each extension of a gap
-f <negative int>, --gapCreate <negative int>
(value required) The cost of creating a gap
-n <homer|marge|bart|lisa|maggie>, --name <homer|marge|bart|lisa -n <homer|marge|bart|lisa|maggie>, --name <homer|marge|bart|lisa
|maggie> (accepted multiple times) |maggie> (accepted multiple times)
(required) (value required) Name to print. This is a long, (required) (value required) Name to print. This is a long,